Welcome to the KINC documentation!ΒΆ
The Knowledge Independent Network Construction (KINC) software is a C++ application for constructing Gene Co-expression Networks (GCN) from gene expression data.
- About KINC
- Functional Overview
- Data Format Overview
- Prepare Input Data
- Installation
- Usage
- How to Create a Network
- Before Getting Started
- Traditional Approach
- GMM approach
- Step 1: Import the GEM
- Step 2: Perform GMM + Correlation Analysis
- Step 3: Filter Low-Powered Edges
- Step 4: Condition-Specific Filtering
- Step 5: Extract Condition-Specific Subgraphs
- Step 6: Remove Biased Edges
- Step 7: Generate Summary Plots
- Step 8: Threshold the Network by Ranks
- Step 9: Visualization
- Auxiliary Scripts
- Troubleshooting
- How to Cite KINC
- Publications Using KINC