How to Cite KINC¶

If you find KINC useful in your research, please cite the following two publications:

Shealy, B. T., Burns, J. J. R., Smith, M. C., Alex Feltus, F., & Ficklin, S. P. (2019). GPU Implementation of Pairwise Gaussian Mixture Models for Multi-Modal Gene Co-Expression Networks. IEEE Access, 7, 160845–160857.

Burns, J. J. R., Shealy, B. T., Greer, M. S., Hadish, J. A., McGowan, M. T., Biggs, T., Smith, M. C., Feltus, F. A., & Ficklin, S. P. (2022). Addressing noise in co-expression network construction. Briefings in Bioinformatics, 23(1). https://doi.org/10.1093/bib/bbab495

Publications Using KINC¶

The following publications use KINC:

McKnight CB, Poulos AL, Bender MR, Calhoun JC, Feltus FA. Exploring Lossy Compression of Gene Expression Matrices (2019). IEEE/ACM 5th International Workshop on Data Analysis and Reduction for Big Scientific Data (DRBSD-5). 28-34
Shealey B, Burns JJR, Smith MC, Feltus FA, Ficklin SP. GPU Implementation of Pairwise Gaussian Mixture Models for Multi-Modal Gene Co-Expression Networks (2019). IEEE Access. 7:160845-160857.
Poehlman WL, Schnabel E, Chavan S, Frugoli JA, Feltus FA. Identifying Temporally Regulated Root Nodulation Biomarkers Using Time Series Gene Co-Expression Network Analysis (2019). Frontiers in Plant Science. 10, p1409.
Honaas LA, Hargarten HL, Ficklin SP, Hadish JA, Wafula E, Mattheis JP, Rudell DR. Co-expression networks provide insights into molecular mechanisms of postharvest temperature modulation of apple fruit to reduce superficial scald (2019). Postharvest Biology and Technology, 149:27-41.
Dunwoodie LJ, Poehlman WL, Ficklin SP, Feltus FA. Discovery and validation of a glioblastoma co-expressed gene module (2018). Oncotarget. 9(13):10995–11008
Ficklin SP, Dunwoodie LJ, Poehlman WL, Watson C, Roche KE, Feltus FA. Discovering condition-specific gene co-expression patterns using gaussian mixture models: a cancer case study (2017) Scientific Reports. 7: 8617
Poehlman WL, Rynge M, Balamurugan D, Nills M, Feltus FA. OSG-KINC: High-throughput gene co-expression network construction using the open science grid (2017). IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 1827-1831.